Computational Methods Development
Machine Learning
Big Data & Biodiversity

Hsiang AY, Brombacher A, Rillo MC, Mleneck-Vautravers MJ, Conn S, Lordsmith S, Jentzen A, Henehan MJ, Metcalfe B, Fenton I, Wade BS, Fox L, Meilland J, Davis CV, Baranowski U, Groeneveld J, Edgar KM, Movellan A, Aze T, Dowsett H, Miller G, Rios N, Hull PM. (2019) Endless Forams: >34,000 modern planktonic foraminiferal images for taxonomic training and automated species recognition using convolutional neural networks. Paleoceanography and Paleoclimatology. 34. (doi:10.1029/2019PA003612) [Permalink][PDF]
Field DJ, Berv JS, Hsiang AY, Lanfear R, Landis MJ, Dornburg A. Timing the extant avian radiation: The rise of modern birds, and the importance of modelling molecular rate variation. PeerJ. (doi:10.7287/peerj.preprints.27521v1) [Permalink][PDF]
Elder LE, Hsiang AY, Nelson K, Strotz LC, Kahanamoku S, Hull PM. (2018) Sixty-one thousand recent planktonic foraminifera from the Atlantic Ocean. Scientific Data. 5:180109. (doi:10.1038/sdata.2018.109) [Permalink][PDF]
Field DJ and Hsiang AY. (2018) A North American stem turaco, and the complex biogeographic history of modern birds. BMC Evolutionary Biology. 18:102. (DOI: 10.1186/s12862-018-1212-3) [Permalink][PDF]
Kahanamoku S, Hull P, Lindberg D, Hsiang AY, Clites EC, Finnegan S. Twelve thousand Recent limpets (Mollusca, Patellogastropoda) from a northeastern Pacific latitudinal gradient. (2018) Scientific Data. 5:170197. (DOI: 10.1038/sdata.2017/197) [Permalink][PDF]
Hsiang AY, Nelson K, Elder LE, Sibert EC, Kahanamoku SS, Burke JE, Kelly A, Liu Y, Hull PM. (2017) AutoMorph: Accelerating morphometrics with automated 2D and 3D image processing and shape extraction. Methods in Ecology and Evolution. 9(3):605-612. (DOI: 10.1111/2041-210X.12915) [Permalink][PDF]
Field DJ, Boessenecker R, Racicot RA, Asbjarndottir L, Jónasson K, Hsiang AY, Behlke AD, Vinther J. (2017) The oldest marine vertebrate fossil from the volcanic island of Iceland: A partial right whale skull from the high latitude Pliocene Tjörnes Formation. Palaeontology. 2017:1-8. (DOI: 10.1111/pala.12275) [Permalink][PDF]
Hsiang AY, Elder LE, Hull PM. (2016) Morphology as a common metric of assemblage dynamics in the fossil record: a test case of planktonic foraminifera. Philosophical Transactions of the Royal Society B. 371:20150227. (DOI: 10.1098/rstb.2015.0227) [Permalink][PDF]
Hsiang AY, Field DJ, Webster TH, Behlke ADB, Davis MB, Racicot RA & Gauthier JA. (2015) The origin of snakes: revealing the ecology, behavior, and evolutionary history of early snakes using genomics, phenomics, and the fossil record. BMC Evolutionary Biology. 15:87. (DOI: 10.1186/s12862-015-0358-5) [Permalink][PDF]
Lyson TR, Bever GS, Scheyer TM, Hsiang AY & Gauthier JA. (2013) Evolutionary origin of the turtle shell. Current Biology. 23:1-7. (DOI: 10.1186/s12862-015-0358-5) [Permalink][PDF]

Last updated: July 23, 2019